Here you can find some relevant publications but if you are interested in checking further, you can browse around in Gooooooooogle Scholar
Sáenz, J. S., Yergaliyev, T., Rios-Galicia, B., Seifert, J., & Camarinha-Silva, A. (2026). The chicken gut virome: spatial structuring and extensive diversity of 19,778 viral populations. Msystems, e00191-26.
Sáenz, J. S., Rios-Galicia, B., & Seifert, J. (2025). Antiviral defense systems in the rumen microbiome. mSystems, 10 (2), e01521-24.
Eichinger, J., Seifert, J., Sáenz, J. S., Amin, N., Lorenz, S., Eckel, F., … & Brugger, D. (2025). The interaction of microplastics with the ruminal ecosystem in vitro. Journal of Hazardous Materials, 140481.
Rios-Galicia, B., Sáenz, J. S., Yergaliyev, T., Roth, C., Camarinha-Silva, A., & Seifert, J. (2024). Novel taxonomic and functional diversity of eight bacteria from the upper digestive tract of chicken. International Journal of Systematic and Evolutionary Microbiology, 74(1), 006210.
Sáenz, J. S., Rios-Galicia, B., Rehkugler, B., & Seifert, J. (2023). Dynamic development of viral and bacterial diversity during grass silage preservation. Viruses, 15(4), 951.
Tröscher-Mußotter, J., Saenz, J. S., Grindler, S., Meyer, J., Kononov, S. U., Mezger, B., … & Seifert, J. (2021). Microbiome Clusters Disclose Physiologic Variances in Dairy Cows Challenged by Calving and Lipopolysaccharides. Msystems, 6(5), e00856-21.
Sáenz, J. S., Marques, T. V., Barone, R. S. C., Cyrino, J. E. P., Kublik, S., Nesme, J., … & Vestergaard, G. (2019). Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus. Microbiome, 7(1), 1-14.
Sáenz, J. S., Roldan, F., Junca, H., & Arbeli, Z. (2019). Effect of the extraction and purification of soil DNA and pooling of PCR amplification products on the description of bacterial and archaeal communities. Journal of Applied Microbiology, 126(5), 1454-1467.
Schulze-Makuch, D., Wagner, D., Kounaves, S. P., Mangelsdorf, K., Devine, K. G., de Vera, J. P., Saenz, J. S., … & Zamorano, P. (2018). Transitory microbial habitat in the hyperarid Atacama Desert. Proceedings of the National Academy of Sciences, 115(11), 2670-2675.